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Re: [S] Idiosyncracy in GAM function

To: "Mark Goldberg (mark@polair.epi.mcgill.ca)" <mark@polair.epi.mcgill.ca>
Subject: Re: [S] Idiosyncracy in GAM function
From: Prof Brian D Ripley <ripley@stats.ox.ac.uk>
Date: Wed, 24 Feb 1999 07:03:56 +0000 (GMT)
Cc: s-news@wubios.wustl.edu, ravinder <ravinder@polair.epi.mcgill.ca>
In-reply-to: <Pine.SOL.3.91.990223184211.19038P@polair.epi.mcgill.ca>
Sender: owner-s-news@wubios.wustl.edu
On Tue, 23 Feb 1999, Mark Goldberg (mark@polair.epi.mcgill.ca) wrote:

> 
> I have just discovered an interesting feature of the gam function. In
> fitting complex time series data using quasi-likelihood, I have found that
> the final results of the fit depend on the order of the covariates. For
> example, the model
> 
> log(y) = a + lo(day,span=0.05) + lo(year) + lo(x) 
> 
> will give slightly different estimates of the dispersion parameter,
> residual deviances, residual degrees of freedom, standard errors and the
> like than a model, say,
> 
> log(y) = a + lo(year) + lo(x) + lo(day,span=0.05). 
>  
> The differences all occur in the fifth decimal place, so that the effects 
> are extremely minor, but nevertheless disconcerting.
> 
> I'm curious to know whether any one else has run into this and whether 
> there is a simple explanation. 

Try changing the convergence criteria in gam.control. Like glm, gam has
rather loose convergence default criteria: in both cases the lack of
convergence is rarely important.

More seriously, there is a priori no reason why a gam model need have a
single solution, and we have seen examples where equivalent models using
s() that converge to different solutions (with different
(quasi-)likelihoods).  When using lo() it is even unclear what problem a
gam is solving.

-- 
Brian D. Ripley,                  ripley@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272860 (secr)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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