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Flexible Beta Clustering

To: s-news@lists.biostat.wustl.edu
Subject: Flexible Beta Clustering
From: Erik Silldorff <silldorf@lifesci.ucsb.edu>
Date: Wed, 16 Apr 2003 15:00:37 -0700
Greetings,

I would like to implement a "flexible beta" heirarchical agglomerative
clustering method in Splus (version 6.0 running Windows 98).  Two versions
have been proposed: a weighted averages method (Lance and Williams 1967
[this has been implemented in SAS Proc Cluster]), and an unweighted/group
average method (Belbin et al. 1992).  I am most interested in the latter
group average method (also called UPGMA).  Has S code been written to
implement these clustering methods, and is such code available?

Thanks!

Erik Silldorff
Department of Ecology, Evolution, and Marine Biology
University of California, Santa Barbara



*************************
Lance, G.N. and W.T. Williams.  1966.  A general theory of classificatory
sorting strategies: I. Hierarchical systems.  Computer Journal 9: 373-380.

Belbin, L., D.P. Faith, and G.W. Milligan.  1992.  A comparison of two
approaches to beta-flexible clustering.  Multivariate Behavioral Research
27(3): 417-433.
*************************






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