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Re: cluster in lme

To: <s-news@lists.biostat.wustl.edu>
Subject: Re: cluster in lme
From: "Puschner, Bernd" <Bernd.Puschner@bkh-guenzburg.de>
Date: Wed, 31 Oct 2007 16:35:57 +0100
dear all,

the solution to the problem is a slash.

the model which takes into account cluster randomisation then writes:

emm.statc.lme <- lme(data = emm.stat, random = ~weeks | tn.mainc / code, fixed 
= oq.tot ~ weeks, na.action = na.omit) 

summary(emm.statc.lme) then has 
        Formula:  ~ weeks | code %in% tn.mainc and
        Number of Groups: 
        tn.mainc code %in% tn.mainc 
       39                294

as compared to the model which does not take into account cluster randomisation 
(which writes: emm.stat.lme <- lme(data = emm.stat, random = ~weeks | code, 
fixed = oq.tot ~ weeks, na.action = na.omit), standard errors and subsequently 
t-values of fixed effects increase while coefficients remain more or less 
unchanged. perfect.

thanks so much to klaas for the valuable help.

best wishes

bernd



>-----Ursprüngliche Nachricht-----
>Von: s-news-owner@lists.biostat.wustl.edu 
>[mailto:s-news-owner@lists.biostat.wustl.edu] Im Auftrag von 
>Puschner, Bernd
>Gesendet: Freitag, 27. Juli 2007 11:44
>An: s-news@lists.biostat.wustl.edu
>Betreff: [S] cluster in lme
>
>dear all,
>
>i am analyzing data of a cluster-randomized trial via lme. when calling
>
>a.lme <- lme(data = emm.stat, random = ~weeks | code, fixed = 
>v6.a ~ weeks * as.factor(group.fi), na.action = na.omit) 
>
>everything is fine, but cluster structure is ignored; so I call
>
>b.lme <- lme(data = emm.stat, random = ~weeks | code, fixed = 
>v6.a ~ weeks * as.factor(group.fi),  cluster =~ 
>as.factor(cs.group), na.action = na.omit) 
>
>but get this error message
>
>> b.lme <- lme(data = emm.stat, random =  ~ weeks | code, 
>fixed = v6.a ~
>weeks *
>       as.factor(group.fi), cluster =  ~ as.factor(cs.group), 
>na.action = 
>       na.omit)
>Problem in lme: argument cluster= not matched: lme(data = 
>emm.stat, random =  ~ weeks | code, fixed = v6.a ~ weeks * 
>       as.factor(group.fi), cluster =  ~ as.factor(cs.group), 
>na.action = 
>       na.omit)
>Use traceback() to see the call stack
>
>any help would be highly appreciated.
>
>best wishes
>
>bernd----------------------------------------------------------
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